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Python Modules for Circos Plot

Build Status codecov

1. Pre Installation

As official, Pyhton2 will end life form 2020-1-1, So we develop a new version support Python3.5+, We deeply recommand all users using the python version 3.5+, Thx!

Python 3.5+ packages(automatically installed)

  1. numpy
  2. pandas
  3. matplotlib

2. Installation

intall dev branch

  1. install from source code
git clone https://github.com/KimBioInfoStudio/PyCircos.git
cd PyCircos
pip install -r requirements.txt
python3 setup.py install [--user]
  1. or install form source code with using 'make'
git clone https://github.com/KimBioInfoStudio/PyCircos.git
cd PyCircos
make install
  1. install release branch
pip install pycircos

3. Examples

command

cd ./test/
python3 test.py
open ./demo.png

results