_pkgdown.yml

url: https://kasperskytte.github.io/ampvis2/
home:
  links:
  - text: Latest stable release
    href: https://github.com/kasperskytte/ampvis2
template:
  params:
    bootswatch: yeti
    docsearch:
      api_key: b0ba3a3eb751685982ccf010113f380a
      index_name: ampvis2
    ganalytics: UA-93913019-2
reference:
- title: Data and filtering
  desc: Functions for loading, exporting and subsetting the data.
  contents:
  - amp_load
  - amp_filter_samples
  - amp_filter_taxa
  - amp_merge_replicates
  - amp_merge_ampvis2
  - amp_import_biom
  - amp_import_usearch
  - amp_export_fasta
  - amp_export_otutable
  - amp_export_long
- title: Summary functions
  contents: amp_alphadiv
- title: Plotting functions
  desc: Functions for visualising amplicon data.
  contents:
  - amp_rarecurve
  - amp_octave
  - amp_boxplot
  - amp_heatmap
  - amp_ordinate
  - amp_timeseries
  - amp_venn
  - amp_core
  - amp_frequency
  - amp_otu_network
  - amp_rank_abundance
- title: Utility functions
  desc: Various utility functions that are also used internally in several ampvis2
    functions, but may also be useful in other custom scenarios.
  contents:
  - amp_rarefy
  - normaliseTo100
  - filter_otus
  - aggregate_abund
  - matchOTUs
- title: Data sets
  contents:
  - MiDAS
  - AalborgWWTPs
  - example_metadata
  - example_otutable
  - example_taxonomy
  - midasfunctions
navbar:
  title: ampvis2
  left:
  - text: Home
    href: index.html
  - text: Get Started
    href: articles/ampvis2.html
  - text: Functions
    href: reference/index.html
  - text: FAQ
    href: articles/faq.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/kasperskytte/ampvis2