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Support for GradCam #45

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johnbradley opened this issue Sep 20, 2024 · 1 comment · May be fixed by #64
Open

Support for GradCam #45

johnbradley opened this issue Sep 20, 2024 · 1 comment · May be fixed by #64

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@johnbradley
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Look into the possibility of using pytorch-grad-cam with bioclip. As part of this we would need to gather feedback on the caveats related using GradCam with pybioclip.
@johnbradley
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We already have a branch with a notebook that makes a first pass at using pytorch-grad-cam:
https://github.com/Imageomics/pybioclip/blob/gradcam/GradCam.ipynb

johnbradley added a commit that referenced this issue Nov 20, 2024
@johnbradley
Add changes to work better with pytorch-grad-cam
952e5a3 
Changes classifier base class to extend nn.Module and implements the
forward() method so the classifiers can be used with pytorch-grad-cam.

Fixes #45
johnbradley added a commit that referenced this issue Nov 20, 2024
@johnbradley
Add changes to work better with pytorch-grad-cam
c5f26f2 
Changes classifier base class to extend nn.Module and implements the
forward() method so the classifiers can be used with pytorch-grad-cam.

Fixes #45
johnbradley added a commit that referenced this issue Nov 20, 2024
@johnbradley
Add changes to work better with pytorch-grad-cam
e17fe16 
Changes classifier base class to extend nn.Module and implements the
forward() method so the classifiers can be used with pytorch-grad-cam.

Fixes #45
johnbradley added a commit that referenced this issue Nov 20, 2024
@johnbradley
Add changes to work better with pytorch-grad-cam
6de010c 
Changes classifier base class to extend nn.Module and implements the
forward() method so the classifiers can be used with pytorch-grad-cam.
torch.no_grad was removed from create_probabilities because the
calling functions already did this and pytorch-grad-cam needs grad
enabled.

Fixes #45
@johnbradley johnbradley linked a pull request Nov 20, 2024 that will close this issue
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Add changes to work better with pytorch-grad-cam Imageomics/pybioclip
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@johnbradley