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Add additional indexes for accessions #980

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merged 1 commit into from
Oct 5, 2024
Merged

Add additional indexes for accessions #980

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84 changes: 84 additions & 0 deletions isic/ingest/migrations/0007_accession_ingest_acce_fitzpat_15c454_idx_and_more.py
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Original file line number Diff line number Diff line change
@@ -0,0 +1,84 @@
# Generated by Django 5.1.1 on 2024-10-05 00:51

from django.conf import settings
from django.db import migrations, models


class Migration(migrations.Migration):
dependencies = [
("ingest", "0006_accession_valid_diagnosis_accession_valid_legacy_dx"),
migrations.swappable_dependency(settings.AUTH_USER_MODEL),
]

operations = [
migrations.AddIndex(
model_name="accession",
index=models.Index(
fields=["fitzpatrick_skin_type"], name="ingest_acce_fitzpat_15c454_idx"
),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(
condition=models.Q(
(
"anatom_site_general__in",
["palms/soles", "lateral torso", "oral/genital"],
)
),
fields=["anatom_site_general"],
name="accession_anatom_site_general",
),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(
condition=models.Q(("benign_malignant", "benign"), _negated=True),
fields=["benign_malignant"],
name="accession_benign_malignant",
),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(
condition=models.Q(("diagnosis__in", [None, "", "Benign"]), _negated=True),
fields=["diagnosis"],
name="accession_diagnosis",
),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(fields=["legacy_dx"], name="ingest_acce_legacy__33310d_idx"),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(fields=["mel_class"], name="ingest_acce_mel_cla_716507_idx"),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(fields=["mel_mitotic_index"], name="ingest_acce_mel_mit_261415_idx"),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(fields=["mel_type"], name="ingest_acce_mel_typ_5d54e1_idx"),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(fields=["mel_ulcer"], name="ingest_acce_mel_ulc_d11b54_idx"),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(fields=["nevus_type"], name="ingest_acce_nevus_t_8c8b30_idx"),
),
migrations.AddIndex(
model_name="accession",
index=models.Index(
condition=models.Q(
("image_type__in", ["TBP tile: close-up", "dermoscopic"]),
_negated=True,
),
fields=["image_type"],
name="accession_image_type",
),
),
]
30 changes: 30 additions & 0 deletions isic/ingest/models/accession.py
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Expand Up @@ -385,6 +385,36 @@ class Meta(CreationSortedTimeStampedModel.Meta):
# metadata selection does WHERE original_blob_name IN (...) queries
models.Index(fields=["original_blob_name"]),
models.Index(fields=["girder_id"]),
# metadata fields
models.Index(fields=["fitzpatrick_skin_type"]),
models.Index(
name="accession_anatom_site_general",
fields=["anatom_site_general"],
condition=Q(
anatom_site_general__in=["palms/soles", "lateral torso", "oral/genital"]
),
),
models.Index(
name="accession_benign_malignant",
fields=["benign_malignant"],
condition=~Q(benign_malignant="benign"),
),
models.Index(
name="accession_diagnosis",
fields=["diagnosis"],
condition=~Q(diagnosis__in=[None, "", "Benign"]),
),
models.Index(fields=["legacy_dx"]),
models.Index(fields=["mel_class"]),
models.Index(fields=["mel_mitotic_index"]),
models.Index(fields=["mel_type"]),
models.Index(fields=["mel_ulcer"]),
models.Index(fields=["nevus_type"]),
models.Index(
name="accession_image_type",
fields=["image_type"],
condition=~Q(image_type__in=["TBP tile: close-up", "dermoscopic"]),
),
]

def __str__(self) -> str:
Expand Down
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