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DRAGMAP installation #49

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mtaema opened this issue Dec 15, 2022 · 0 comments
Open

DRAGMAP installation #49

mtaema opened this issue Dec 15, 2022 · 0 comments

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@mtaema
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mtaema commented Dec 15, 2022

Hello, Thank you for making DRAGMAP available to install.

  1. I tried to install it using conda install -c bioconda dragmap but I could not get the latest version as follow:
    Collecting package metadata (current_repodata.json): done
    Solving environment: failed with initial frozen solve. Retrying with flexible solve.
    Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
    Collecting package metadata (repodata.json): done
    Solving environment: failed with initial frozen solve. Retrying with flexible solve.
    Solving environment: |
    Found conflicts! Looking for incompatible packages.
    This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package libgcc-ng conflicts for:
dragmap -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0']
dragmap -> zlib[version='>=1.2.12,<1.3.0a0'] -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
python=3.7 -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']

Package libstdcxx-ng conflicts for:
python=3.7 -> libffi[version='>=3.4,<3.5'] -> libstdcxx-ng[version='>=11.2.0|>=7.5.0']
python=3.7 -> libstdcxx-ng[version='>=7.2.0|>=7.3.0']The following specifications were found to be incompatible with your system:

  • feature:/linux-64::__glibc==2.31=0
  • feature:|@/linux-64::__glibc==2.31=0
  • dragmap -> libgcc-ng[version='>=10.3.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.31

However, when I run dragen-os --help, I got the message "command not found".

  • ===============================================================================
  1. I also tried to install it using the following code:
    wget --no-check-certificate https://github.com/Illumina/DRAGMAP/archive/refs/tags/${VERSION}.tar.gz \
&& tar -xvf ${VERSION}.tar.gz \
&& rm ${VERSION}.tar.gz \
&& cd DRAGMAP-${VERSION} \
&& make \
&& make install \
&& dragen-os --help

But I got the following error:

--2022-12-15 21:59:07-- https://github.com/Illumina/DRAGMAP/archive/refs/tags/.tar.gz
Resolving github.com (github.com)... 140.82.121.3
Connecting to github.com (github.com)|140.82.121.3|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://codeload.github.com/Illumina/DRAGMAP/tar.gz/refs/tags/ [following]
--2022-12-15 21:59:07-- https://codeload.github.com/Illumina/DRAGMAP/tar.gz/refs/tags/
Resolving codeload.github.com (codeload.github.com)... 140.82.121.10
Connecting to codeload.github.com (codeload.github.com)|140.82.121.10|:443... connected.
HTTP request sent, awaiting response... 400 Bad Request
2022-12-15 21:59:08 ERROR 400: Bad Request.
`
Kindly, would you please be able to guide me to install DRAGMAP latest version?

Many thanks for your help!

Maged

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