Segmentation fault (core dumped) when building a hash table

[atimms]

I was successful in building a hash table with the alt masked bed file you provide in this repo, but when using version 2 of illumina's maked bed I get a Segmentation fault (core dumped) error, as seen below.

I tried using different versions of dragmap and sorting the bed file in different ways but haven't had any success.

Building hash table from /refs/gatk_ref/Homo_sapiens_assembly38.fasta

Supressing decoys

Reading reference input file /refs/gatk_ref/Homo_sapiens_assembly38.fasta: 3249912778 bytes...
3 sequences, 689445510 bases (689501184 after trimming/padding)
5 sequences, 1061198324 bases (1061166080 after trimming/padding)
8 sequences, 1536488912 bases (1536199680 after trimming/padding)
12 sequences, 2077042982 bases (2076576768 after trimming/padding)
17 sequences, 2574038003 bases (2524183552 after trimming/padding)
23 sequences, 3031042417 bases (2965273600 after trimming/padding)

Reading BED file /refs/hg38_alt_mask_v2.sorted.bed and masking regions...

Total: 3366 sequences, 3217346917 bases (3088479232 after trimming/padding)

Spawning 31 threads build STR table...
Encoding binary reference sequence...
3 sequences, 689445510 bases (689501184 after trimming/padding)
5 sequences, 1061198324 bases (1061166080 after trimming/padding)
8 sequences, 1536488912 bases (1536199680 after trimming/padding)
12 sequences, 2077042982 bases (2076576768 after trimming/padding)
17 sequences, 2574038003 bases (2524183552 after trimming/padding)
23 sequences, 3031042417 bases (2965066752 after trimming/padding)
3366 sequences, 3217346917 bases (3088479232 after trimming/padding)
Segmentation fault (core dumped)

[Rohit-Satyam]

Hi did you find a fix? Idk why but the developer of DRAGMAP has not been actively resolving issues lately.

[atimms]

I never managed to find a fix.

Andrew