protocols deprecated

docs/Utils/Deprecated-programs/index.rst

@@ -41,3 +41,24 @@ List of deprecated programs
 - `reconstruct_fourier_starpu <https://github.com/I2PC/xmipp/pull/685/commits/8a762466adb01d50c854267d5ba48c0bb9466f75>`_
 - `tomo_align_tilt_series, tomo_align_dual_tilt_series, tomo_align_refinement, tomo_align_refinement, tomo_extract_subvolume, tomo_project_main, tomo_remove_fluctuations <https://github.com/I2PC/xmipp/pull/685/commits/9f1335854eadadad2e111b8f0062e4cdf7e8d6c4>`_
 - `tomo_align_tilt
+
+List of deprecated protocols
+-----------------------------
+* :doc:`protocol_mltomo`
+* :doc:`protocol_movie_average`
+* :doc:`protocol_subtract_projection`
+* :doc:`protocol_deep_align <https://github.com/I2PC/scipion-em-xmipp/pull/614/commits/497f1f3596a78a35d58c8b9baebc07e78f311e48>`
+* :doc:`protocol_reconstruct_heterogeneous <https://github.com/I2PC/scipion-em-xmipp/pull/614/commits/f5844c0207d9f74a30f0e0afbbf0868207460836>`
+* :doc:`protocol_metaprotocol_create_output <https://github.com/I2PC/scipion-em-xmipp/pull/614/commits/f5844c0207d9f74a30f0e0afbbf0868207460836>`
+* :doc:`protocol_metaprotocol_discrete_heterogeneity_scheduler <https://github.com/I2PC/scipion-em-xmipp/pull/614/commits/f5844c0207d9f74a30f0e0afbbf0868207460836>`
+* :doc:`apply_deformation_zernike3d <https://github.com/I2PC/scipion-em-xmipp/commit/278996293f685995370ec80be5046c05677bf6ca>`
+* :doc:`classify_kmeans2d <https://github.com/I2PC/scipion-em-xmipp/commit/6378a4ef7c8457b86dc14223ef39eab3d503b4fc>`
+* :doc:`kmeans_clustering <https://github.com/I2PC/scipion-em-xmipp/commit/3f9333f5b2c056b2abea8ad751b7f8e216bc113a>`
+* :doc:`rotational_spectra <https://github.com/I2PC/scipion-em-xmipp/commit/d032963d8b003e0b3c4c5df6d4bd306e4b3dea6c>`
+* :doc:`particle_boxSize <https://github.com/I2PC/scipion-em-xmipp/pull/636/commits/ad2fa0e670282e86aafab13c5b11a79d4bdc11e0>`
+* :doc:`protocol_split_volume_hierarchical_cluster <https://github.com/I2PC/scipion-em-xmipp/pull/700/commits/9c4ac348585841aaaf3c44c0cef7982a3f10a8fc>`
+* :doc:`deep_denoissing <https://github.com/I2PC/scipion-em-xmipp/commit/547a5fe1b49d58a32ea61091b7615c299d2ed377>`
+* :doc:`metaprotocol_create_subset <https://github.com/I2PC/scipion-em-xmipp/commit/bca78f9c8ba48ca203d7b83c56b885cc55c9eba2>`
+* :doc:`metaprotocol_golden_highres <https://github.com/I2PC/scipion-em-xmipp/commit/4bc23c0a47a0267da6046a1ee7179ec470aaa7f3>`
+* :doc:`solid_angle <https://github.com/I2PC/scipion-em-xmipp/commit/086710d671b0bcb388c4b99d662991e761952a44>`
+* :doc:`split_volume <https://github.com/I2PC/scipion-em-xmipp/commit/b297c596441df37a626ec97c4d7373d858364cb6>`