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albertmena authored Nov 13, 2023
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14 changes: 7 additions & 7 deletions docs/Installation/InstallationNotes/index.rst
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Expand Up @@ -370,16 +370,16 @@ This is because the version of libstdc++ of the system is newer than the one use
To fix it there are two options:

1. Change the symbolic link of libstdc++ in your scipion enviroment of conda:

Verify the version of libstdc++.so... on the enviroment
``cd $CONDA_PREFIX/envs/your_env/lib``

Verify that _ZSt28__throw_bad_array_new_lengthv is missing in the target shared object
``objdump -T libstdc++.so.6.0.28 | grep throw_bad_array``

Verify the version of libstdc++.so... on your system
``find /usr -name "libstdc++.so*"``
Back-up the target shared object
``mv libstdc++.so.6.0.28 libstdc++.so.6.0.28.old``

``mv libstdc++.so.VERSION_ENV. libstdc++.so.VERSION_ENV.old``
Change the target to point on the system's
``ln -s /usr/lib64/libstdc++.so.6.0.29 libstdc++.so.6.0.28``
``ln -s /usr/lib.../libstdc++.so.VERSION_SYSTEM libstdc++.so.VERSION_ENV``


2. Install compiler toolchain in conda:
``conda install c-compiler cxx-compiler``
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