Fix

Hjorthmedh · Nov 24, 2024 · 9e7d0d5 · 9e7d0d5
1 parent 62e566f
commit 9e7d0d5
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Showing 3 changed files with 15 additions and 3 deletions.
diff --git a/examples/parallel/KTH_PDC/input_tuning/purge_bad.sh b/examples/parallel/KTH_PDC/input_tuning/purge_bad.sh
diff --git a/examples/parallel/KTH_PDC/input_tuning/purge_bad_ver.sh b/examples/parallel/KTH_PDC/input_tuning/purge_bad_ver.sh
@@ -0,0 +1,12 @@
+python purge_bad_parameters.py networks/verify_input_dspn_cortical networks/verify_input_dspn_cortical/figures/_bad/ --snudda_data /home/hjorth/HBP/BasalGangliaData/data/
+
+
+python purge_bad_parameters.py networks/verify_input_dspn_thalamic networks/verify_input_dspn_thalamic/figures/_bad/ --snudda_data /home/hjorth/HBP/BasalGangliaData/data/
+
+
+python purge_bad_parameters.py networks/verify_input_ispn_cortical networks/verify_input_ispn_cortical/figures/_bad/ --snudda_data /home/hjorth/HBP/BasalGangliaData/data/
+
+
+python purge_bad_parameters.py networks/verify_input_ispn_thalamic networks/verify_input_ispn_thalamic/figures/_bad/ --snudda_data /home/hjorth/HBP/BasalGangliaData/data/
+
+
diff --git a/snudda/input/input_tuning.py b/snudda/input/input_tuning.py
@@ -665,7 +665,7 @@ def update_meta(self, input_config_info, overwrite=True, set_frequency=None):
                 print(f"Parameter key {parameter_key}, morphology key {morphology_key} not found in {meta_file} -- was it manually removed?")
                 continue
 
-            print(f"Writing {parameter_key = }, {morphology_key = }")
+            # print(f"Writing {parameter_key = }, {morphology_key = }")
             if overwrite:
                 meta_data[parameter_key][morphology_key]["input"] = new_config
             else:
@@ -890,8 +890,8 @@ def plot_depolarisation_blocked_neurons(self, freq_bin=10):
             plt.xlabel("Time (ms)")
             plt.ylabel("Voltage (mV)")
 
-            fig_path = os.path.join(self.network_path, "figures",
-                                    f"Bad-trace-{neuron_type}-{full_param_key}-{full_morph_key}.png")
+            fig_path = os.path.join(self.network_path, "figures", "_bad",
+                                    f"{full_morph_key}-{full_param_key}-{neuron_type}-BAD-trace.png")
 
             if not os.path.exists(os.path.dirname(fig_path)):
                 os.mkdir(os.path.dirname(fig_path))