list index out of range

[ken0-1n]

If the 'outputPrefix + ".junction.sort.txt"' is empty in the addPairCoverRegionFromBam() function, then an exception will be thrown.

Traceback (most recent call last):

File "/home/kchiba/.local/bin/GenomonSV", line 67, in
args.func(args)
File "/home/kchiba/.local/lib/python2.7/site-packages/genomonsv/run.py", line 65, in genomonSV_parse
outputPrefix + ".junction.pairCoverage.txt")
File "/home/kchiba/.local/lib/python2.7/site-packages/genomonsv/parseFunction.py", line 414, in addPairCoverRegionFromBam
ID1 = F1[6]
IndexError: list index out of range