diff --git a/rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml b/rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml index 73150dcb0d..a69e6bcac9 100644 --- a/rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5749843/5877226/test_summary.yaml @@ -98,31 +98,32 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -141,32 +142,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/10.5281/zenodo.5749843/5888237/test_summary.yaml b/rdfs/10.5281/zenodo.5749843/5888237/test_summary.yaml index 68bec4ba72..d720b16ea4 100644 --- a/rdfs/10.5281/zenodo.5749843/5888237/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5749843/5888237/test_summary.yaml @@ -108,31 +108,32 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -149,36 +150,35 @@ tests: custom_objects, compile)\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/hdf5_format.py\", line 210, in load_model_from_hdf5\n model_config = json.loads(model_config.decode('utf-8'))\n"] warnings: - non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The - prediction results may be wrong', 'Passing (type, 1) or ''1type'' as a synonym - of type is deprecated; in a future version of numpy, it will be understood - as (type, (1,)) / ''(1,)type''.'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + non-validation-warnings: ['Passing (type, 1) or ''1type'' as a synonym of type + is deprecated; in a future version of numpy, it will be understood as (type, + (1,)) / ''(1,)type''.', 'Model tensorflow version (1, 15) does not match + 1.14.0.The prediction results may be wrong'] + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -195,7 +195,7 @@ tests: custom_objects, compile)\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/hdf5_format.py\", line 210, in load_model_from_hdf5\n model_config = json.loads(model_config.decode('utf-8'))\n"] warnings: - non-validation-warnings: ['Passing (type, 1) or ''1type'' as a synonym of type - is deprecated; in a future version of numpy, it will be understood as (type, - (1,)) / ''(1,)type''.', 'Model tensorflow version (1, 15) does not match - 1.14.0.The prediction results may be wrong'] + non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The + prediction results may be wrong', 'Passing (type, 1) or ''1type'' as a synonym + of type is deprecated; in a future version of numpy, it will be understood + as (type, (1,)) / ''(1,)type''.'] diff --git a/rdfs/10.5281/zenodo.5764892/6322939/test_summary.yaml b/rdfs/10.5281/zenodo.5764892/6322939/test_summary.yaml index cd8500ed8c..acfd218d64 100644 --- a/rdfs/10.5281/zenodo.5764892/6322939/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5764892/6322939/test_summary.yaml @@ -101,105 +101,106 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 - error: No module named 'onnxruntime' - name: reproduce test outputs from test inputs - status: failed - traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 157, in _test_model_inference\n bioimageio_model=model, devices=devices, - weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", - line 205, in create_prediction_pipeline\n bioimageio_model=bioimageio_model, - devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", - line 132, in create_model_adapter\n adapter_cls = _get_model_adapter(weight)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", - line 157, in _get_model_adapter\n from ._onnx_model_adapter import ONNXModelAdapter\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", - line 5, in \n import onnxruntime as rt\n"] - warnings: {} - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 error: null + name: reproduce test outputs from test inputs + status: passed + traceback: null + warnings: {} + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 + error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: null + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 + error: No module named 'onnxruntime' name: reproduce test outputs from test inputs - status: passed - traceback: null + status: failed + traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 157, in _test_model_inference\n bioimageio_model=model, devices=devices, + weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", + line 205, in create_prediction_pipeline\n bioimageio_model=bioimageio_model, + devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", + line 132, in create_model_adapter\n adapter_cls = _get_model_adapter(weight)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", + line 157, in _get_model_adapter\n from ._onnx_model_adapter import ONNXModelAdapter\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", + line 5, in \n import onnxruntime as rt\n"] warnings: {} - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 @@ -240,32 +241,31 @@ tests: " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", line 5, in \n import onnxruntime as rt\n"] warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5764892/6647674/test_summary.yaml b/rdfs/10.5281/zenodo.5764892/6647674/test_summary.yaml index 2cdb70fb8b..75a330ead5 100644 --- a/rdfs/10.5281/zenodo.5764892/6647674/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5764892/6647674/test_summary.yaml @@ -108,114 +108,107 @@ tests: To keep the current behavior, use torch.div(a, b, rounding_mode=''trunc''), or for actual floor division, use torch.div(a, b, rounding_mode=''floor''). (Triggered internally at /opt/conda/conda-bld/pytorch_1646755885937/work/aten/src/ATen/native/BinaryOps.cpp:607.)'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 - error: No module named 'onnxruntime' - name: reproduce test outputs from test inputs - status: failed - traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 157, in _test_model_inference\n bioimageio_model=model, devices=devices, - weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", - line 205, in create_prediction_pipeline\n bioimageio_model=bioimageio_model, - devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", - line 132, in create_model_adapter\n adapter_cls = _get_model_adapter(weight)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", - line 157, in _get_model_adapter\n from ._onnx_model_adapter import ONNXModelAdapter\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", - line 5, in \n import onnxruntime as rt\n"] - warnings: {} - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 error: null + name: reproduce test outputs from test inputs + status: passed + traceback: null + warnings: {} + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 + error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: null + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 + error: No module named 'onnxruntime' name: reproduce test outputs from test inputs - status: passed - traceback: null - warnings: - non-validation-warnings: ['floor_divide is deprecated, and will be removed in - a future version of pytorch. It currently rounds toward 0 (like the ''trunc'' - function NOT ''floor''). This results in incorrect rounding for negative - values. - - To keep the current behavior, use torch.div(a, b, rounding_mode=''trunc''), - or for actual floor division, use torch.div(a, b, rounding_mode=''floor''). - (Triggered internally at /opt/conda/conda-bld/pytorch_1646755885937/work/aten/src/ATen/native/BinaryOps.cpp:607.)'] + status: failed + traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 157, in _test_model_inference\n bioimageio_model=model, devices=devices, + weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", + line 205, in create_prediction_pipeline\n bioimageio_model=bioimageio_model, + devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", + line 132, in create_model_adapter\n adapter_cls = _get_model_adapter(weight)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", + line 157, in _get_model_adapter\n from ._onnx_model_adapter import ONNXModelAdapter\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", + line 5, in \n import onnxruntime as rt\n"] + warnings: {} - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 error: null @@ -255,34 +248,41 @@ tests: " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", line 5, in \n import onnxruntime as rt\n"] warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed traceback: null - warnings: {} + warnings: + non-validation-warnings: ['floor_divide is deprecated, and will be removed in + a future version of pytorch. It currently rounds toward 0 (like the ''trunc'' + function NOT ''floor''). This results in incorrect rounding for negative + values. + + To keep the current behavior, use torch.div(a, b, rounding_mode=''trunc''), + or for actual floor division, use torch.div(a, b, rounding_mode=''floor''). + (Triggered internally at /opt/conda/conda-bld/pytorch_1646755885937/work/aten/src/ATen/native/BinaryOps.cpp:607.)'] diff --git a/rdfs/10.5281/zenodo.5817052/5850574/test_summary.yaml b/rdfs/10.5281/zenodo.5817052/5850574/test_summary.yaml index 99ca6f4426..a35d055889 100644 --- a/rdfs/10.5281/zenodo.5817052/5850574/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5817052/5850574/test_summary.yaml @@ -107,31 +107,32 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -150,32 +151,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/10.5281/zenodo.5817052/5906839/test_summary.yaml b/rdfs/10.5281/zenodo.5817052/5906839/test_summary.yaml index 47da3f3a51..e78fb7ad62 100644 --- a/rdfs/10.5281/zenodo.5817052/5906839/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5817052/5906839/test_summary.yaml @@ -100,31 +100,32 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -143,32 +144,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/10.5281/zenodo.5847355/6322908/test_summary.yaml b/rdfs/10.5281/zenodo.5847355/6322908/test_summary.yaml index 4f3c549210..d8238d55f9 100644 --- a/rdfs/10.5281/zenodo.5847355/6322908/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5847355/6322908/test_summary.yaml @@ -120,62 +120,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5847355/6647683/test_summary.yaml b/rdfs/10.5281/zenodo.5847355/6647683/test_summary.yaml index c94b616398..b241b53ff3 100644 --- a/rdfs/10.5281/zenodo.5847355/6647683/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5847355/6647683/test_summary.yaml @@ -119,62 +119,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5869899/5869900/test_summary.yaml b/rdfs/10.5281/zenodo.5869899/5869900/test_summary.yaml index 2d2b074281..27fdb4d868 100644 --- a/rdfs/10.5281/zenodo.5869899/5869900/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5869899/5869900/test_summary.yaml @@ -98,62 +98,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5869899/6321179/test_summary.yaml b/rdfs/10.5281/zenodo.5869899/6321179/test_summary.yaml index b48670977e..8dbd21de7c 100644 --- a/rdfs/10.5281/zenodo.5869899/6321179/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5869899/6321179/test_summary.yaml @@ -120,62 +120,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5869899/6647688/test_summary.yaml b/rdfs/10.5281/zenodo.5869899/6647688/test_summary.yaml index f7725611a3..8cfc6c9931 100644 --- a/rdfs/10.5281/zenodo.5869899/6647688/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5869899/6647688/test_summary.yaml @@ -119,62 +119,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5874741/5874742/test_summary.yaml b/rdfs/10.5281/zenodo.5874741/5874742/test_summary.yaml index dbc64ce7d9..ed3c26236d 100644 --- a/rdfs/10.5281/zenodo.5874741/5874742/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5874741/5874742/test_summary.yaml @@ -124,62 +124,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5874841/5874842/test_summary.yaml b/rdfs/10.5281/zenodo.5874841/5874842/test_summary.yaml index e43d6e7978..46667ae810 100644 --- a/rdfs/10.5281/zenodo.5874841/5874842/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5874841/5874842/test_summary.yaml @@ -120,62 +120,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5874841/6630266/test_summary.yaml b/rdfs/10.5281/zenodo.5874841/6630266/test_summary.yaml index 1418733eb9..f1a369994b 100644 --- a/rdfs/10.5281/zenodo.5874841/6630266/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5874841/6630266/test_summary.yaml @@ -119,62 +119,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.5910854/5911832/test_summary.yaml b/rdfs/10.5281/zenodo.5910854/5911832/test_summary.yaml index 74a55bf22d..90fcefa318 100644 --- a/rdfs/10.5281/zenodo.5910854/5911832/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5910854/5911832/test_summary.yaml @@ -69,20 +69,17 @@ tests: - {bioimageio_spec_version: 0.4.8post1, error: rdf does not have a compatible weight format, name: Initial compatibility checks with DeepImageJ, status: failed} ilastik: - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using pytorch_script weights + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 + error: Not found any of the specified weights formats ['pytorch_script'] + name: load resource description nested_errors: null status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] + traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 202, in _test_load_resource\n rdf, weights_priority_order=None if + weight_format is None else [weight_format]\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_io/io_.py\", + line 55, in load_resource_description\n raise ValueError(f\"Not found any + of the specified weights formats {weights_priority_order}\")\n"] warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 @@ -124,18 +121,6 @@ tests: " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", line 5, in \n import onnxruntime as rt\n"] warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 - error: Not found any of the specified weights formats ['pytorch_script'] - name: load resource description - nested_errors: null - status: failed - traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 202, in _test_load_resource\n rdf, weights_priority_order=None if - weight_format is None else [weight_format]\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_io/io_.py\", - line 55, in load_resource_description\n raise ValueError(f\"Not found any - of the specified weights formats {weights_priority_order}\")\n"] - warnings: {} - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 error: null @@ -175,3 +160,18 @@ tests: " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", line 5, in \n import onnxruntime as rt\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using pytorch_script weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/10.5281/zenodo.5910854/6539073/test_summary.yaml b/rdfs/10.5281/zenodo.5910854/6539073/test_summary.yaml index 9b6a89f145..5639ecba6e 100644 --- a/rdfs/10.5281/zenodo.5910854/6539073/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5910854/6539073/test_summary.yaml @@ -69,20 +69,17 @@ tests: sample images to test., name: Downloading testing resources for DeepImageJ., status: failed} ilastik: - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using pytorch_script weights + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 + error: Not found any of the specified weights formats ['pytorch_script'] + name: load resource description nested_errors: null status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] + traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 202, in _test_load_resource\n rdf, weights_priority_order=None if + weight_format is None else [weight_format]\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_io/io_.py\", + line 55, in load_resource_description\n raise ValueError(f\"Not found any + of the specified weights formats {weights_priority_order}\")\n"] warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 @@ -124,18 +121,6 @@ tests: " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", line 5, in \n import onnxruntime as rt\n"] warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 - error: Not found any of the specified weights formats ['pytorch_script'] - name: load resource description - nested_errors: null - status: failed - traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 202, in _test_load_resource\n rdf, weights_priority_order=None if - weight_format is None else [weight_format]\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_io/io_.py\", - line 55, in load_resource_description\n raise ValueError(f\"Not found any - of the specified weights formats {weights_priority_order}\")\n"] - warnings: {} - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 error: null @@ -175,3 +160,18 @@ tests: " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_onnx_model_adapter.py\", line 5, in \n import onnxruntime as rt\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using pytorch_script weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/10.5281/zenodo.5914248/5914249/test_summary.yaml b/rdfs/10.5281/zenodo.5914248/5914249/test_summary.yaml index 97e1b39221..1aac30021e 100644 --- a/rdfs/10.5281/zenodo.5914248/5914249/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5914248/5914249/test_summary.yaml @@ -122,31 +122,32 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -165,32 +166,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/10.5281/zenodo.5914248/6514446/test_summary.yaml b/rdfs/10.5281/zenodo.5914248/6514446/test_summary.yaml index d6fed0fc83..92b89c36bf 100644 --- a/rdfs/10.5281/zenodo.5914248/6514446/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5914248/6514446/test_summary.yaml @@ -106,21 +106,6 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights - nested_errors: null - status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] - warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 error: 'Failed to download https://zenodo.org/api/files/da7b84a8-f43a-4a24-93cd-9716be7b2655/unet_pancreatic_cell_segmentation.h5 @@ -165,3 +150,18 @@ tests: line 479, in _download_url\n raise RuntimeError(f\"Failed to download {uri} ({e})\") from e\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/10.5281/zenodo.5914248/6514622/test_summary.yaml b/rdfs/10.5281/zenodo.5914248/6514622/test_summary.yaml index ffe85f9d37..79a51be7ac 100644 --- a/rdfs/10.5281/zenodo.5914248/6514622/test_summary.yaml +++ b/rdfs/10.5281/zenodo.5914248/6514622/test_summary.yaml @@ -106,21 +106,6 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights - nested_errors: null - status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] - warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 error: 'Failed to download https://zenodo.org/api/files/2d92e820-1b25-40f5-a2af-3219df97d7f7/unet_pancreatic_cell_segmentation.h5 @@ -165,3 +150,18 @@ tests: line 479, in _download_url\n raise RuntimeError(f\"Failed to download {uri} ({e})\") from e\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/10.5281/zenodo.6028097/6028098/test_summary.yaml b/rdfs/10.5281/zenodo.6028097/6028098/test_summary.yaml index 893155f951..665b9e3b7c 100644 --- a/rdfs/10.5281/zenodo.6028097/6028098/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6028097/6028098/test_summary.yaml @@ -120,62 +120,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6028280/6028281/test_summary.yaml b/rdfs/10.5281/zenodo.6028280/6028281/test_summary.yaml index 5884277621..d6c00f5a59 100644 --- a/rdfs/10.5281/zenodo.6028280/6028281/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6028280/6028281/test_summary.yaml @@ -120,62 +120,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6028280/6647695/test_summary.yaml b/rdfs/10.5281/zenodo.6028280/6647695/test_summary.yaml index 46e7bb76e4..4ab5cf243e 100644 --- a/rdfs/10.5281/zenodo.6028280/6647695/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6028280/6647695/test_summary.yaml @@ -119,62 +119,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6348728/6348729/test_summary.yaml b/rdfs/10.5281/zenodo.6348728/6348729/test_summary.yaml index 2f7c529fba..76530c3c4f 100644 --- a/rdfs/10.5281/zenodo.6348728/6348729/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6348728/6348729/test_summary.yaml @@ -122,31 +122,32 @@ tests: cannot unload model', Computed dataset percentiles naively by averaging percentiles of samples., 'Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -165,32 +166,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (1, 15) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/10.5281/zenodo.6406756/6406757/test_summary.yaml b/rdfs/10.5281/zenodo.6406756/6406757/test_summary.yaml index 3d5f526be8..721d42457c 100644 --- a/rdfs/10.5281/zenodo.6406756/6406757/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6406756/6406757/test_summary.yaml @@ -122,31 +122,32 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed @@ -154,32 +155,31 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6406756/6811498/test_summary.yaml b/rdfs/10.5281/zenodo.6406756/6811498/test_summary.yaml index 82a85cee12..6684979469 100644 --- a/rdfs/10.5281/zenodo.6406756/6811498/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6406756/6811498/test_summary.yaml @@ -121,31 +121,32 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed @@ -153,32 +154,31 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6406756/6811922/test_summary.yaml b/rdfs/10.5281/zenodo.6406756/6811922/test_summary.yaml index 41ac85e9a9..8e1b696d60 100644 --- a/rdfs/10.5281/zenodo.6406756/6811922/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6406756/6811922/test_summary.yaml @@ -121,31 +121,32 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed @@ -153,32 +154,31 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6406803/6406804/test_summary.yaml b/rdfs/10.5281/zenodo.6406803/6406804/test_summary.yaml index f9257fa9ab..c73217a765 100644 --- a/rdfs/10.5281/zenodo.6406803/6406804/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6406803/6406804/test_summary.yaml @@ -118,62 +118,62 @@ tests: status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6559474/6559475/test_summary.yaml b/rdfs/10.5281/zenodo.6559474/6559475/test_summary.yaml index 61d59716cf..873bcc6fd2 100644 --- a/rdfs/10.5281/zenodo.6559474/6559475/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6559474/6559475/test_summary.yaml @@ -169,18 +169,24 @@ tests: warnings: {documentation: No '# Validation' (sub)section found.} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 - error: Weight format tensorflow_js is not in supported formats ['pytorch_state_dict', - 'tensorflow_saved_model_bundle', 'torchscript', 'onnx', 'keras_hdf5'] + error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", line 157, in _test_model_inference\n bioimageio_model=model, devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", - line 205, in create_prediction_pipeline\n bioimageio_model=bioimageio_model, - devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", - line 127, in create_model_adapter\n raise ValueError(f\"Weight format {weight_format} - is not in supported formats {weight_formats}\")\n"] - warnings: {} + line 122, in __enter__\n self.load()\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", + line 180, in load\n self._model.load()\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", + line 57, in load\n self._load(devices=devices or self.default_devices)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_keras_model_adapter.py\", + line 41, in _load\n self._model = keras.models.load_model(weight_file)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/save.py\", + line 146, in load_model\n return hdf5_format.load_model_from_hdf5(filepath, + custom_objects, compile)\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/hdf5_format.py\", + line 210, in load_model_from_hdf5\n model_config = json.loads(model_config.decode('utf-8'))\n"] + warnings: + non-validation-warnings: ['Model tensorflow version (1, 12) does not match 1.14.0.The + prediction results may be wrong'] - bioimageio_core_version: 0.5.7 bioimageio_spec_version: 0.4.8 error: null @@ -250,21 +256,15 @@ tests: warnings: {documentation: No '# Validation' (sub)section found.} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 - error: '''str'' object has no attribute ''decode''' + error: Weight format tensorflow_js is not in supported formats ['pytorch_state_dict', + 'tensorflow_saved_model_bundle', 'torchscript', 'onnx', 'keras_hdf5'] name: reproduce test outputs from test inputs status: failed traceback: [" File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", line 157, in _test_model_inference\n bioimageio_model=model, devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", - line 122, in __enter__\n self.load()\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_prediction_pipeline.py\", - line 180, in load\n self._model.load()\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", - line 57, in load\n self._load(devices=devices or self.default_devices)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_keras_model_adapter.py\", - line 41, in _load\n self._model = keras.models.load_model(weight_file)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/save.py\", - line 146, in load_model\n return hdf5_format.load_model_from_hdf5(filepath, - custom_objects, compile)\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/tensorflow/python/keras/saving/hdf5_format.py\", - line 210, in load_model_from_hdf5\n model_config = json.loads(model_config.decode('utf-8'))\n"] - warnings: - non-validation-warnings: ['Model tensorflow version (1, 12) does not match 1.14.0.The - prediction results may be wrong'] + line 205, in create_prediction_pipeline\n bioimageio_model=bioimageio_model, + devices=devices, weight_format=weight_format\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/prediction_pipeline/_model_adapters/_model_adapter.py\", + line 127, in create_model_adapter\n raise ValueError(f\"Weight format {weight_format} + is not in supported formats {weight_formats}\")\n"] + warnings: {} diff --git a/rdfs/10.5281/zenodo.6808325/6808413/test_summary.yaml b/rdfs/10.5281/zenodo.6808325/6808413/test_summary.yaml index 4a493c8ce2..67dd7a2ab5 100644 --- a/rdfs/10.5281/zenodo.6808325/6808413/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6808325/6808413/test_summary.yaml @@ -121,31 +121,32 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed @@ -153,32 +154,31 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6811491/6811492/test_summary.yaml b/rdfs/10.5281/zenodo.6811491/6811492/test_summary.yaml index 5798c57f67..1939150da8 100644 --- a/rdfs/10.5281/zenodo.6811491/6811492/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6811491/6811492/test_summary.yaml @@ -121,31 +121,32 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: reproduce test outputs from test inputs status: passed @@ -153,32 +154,31 @@ tests: warnings: non-validation-warnings: [Computed dataset percentiles naively by averaging percentiles of samples.] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: reproduce test outputs from test inputs status: passed diff --git a/rdfs/10.5281/zenodo.6865412/6919253/test_summary.yaml b/rdfs/10.5281/zenodo.6865412/6919253/test_summary.yaml index 2043529e35..4842d865d7 100644 --- a/rdfs/10.5281/zenodo.6865412/6919253/test_summary.yaml +++ b/rdfs/10.5281/zenodo.6865412/6919253/test_summary.yaml @@ -43,21 +43,6 @@ tests: not yet available: rdf contains the key run_mode with value deepimagej.', name: Initial compatibility checks with DeepImageJ., status: failed} ilastik: - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights - nested_errors: null - status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] - warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 error: 'Failed to download https://github.com/deepimagej/models/u-net_pancreatic_segmentation/U_Net_PhC-C2DL-PSC_segmentation.ipynb @@ -90,3 +75,18 @@ tests: line 479, in _download_url\n raise RuntimeError(f\"Failed to download {uri} ({e})\") from e\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/10.5281/zenodo.7261974/7261975/test_summary.yaml b/rdfs/10.5281/zenodo.7261974/7261975/test_summary.yaml index 75fc2cf9e1..7b809e659f 100644 --- a/rdfs/10.5281/zenodo.7261974/7261975/test_summary.yaml +++ b/rdfs/10.5281/zenodo.7261974/7261975/test_summary.yaml @@ -26,31 +26,32 @@ tests: - {bioimageio_spec_version: 0.4.8post1, error: rdf does not have a compatible weight format, name: Initial compatibility checks with DeepImageJ, status: failed} ilastik: - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -69,32 +70,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (2, 9) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/10.5281/zenodo.7261974/7546703/test_summary.yaml b/rdfs/10.5281/zenodo.7261974/7546703/test_summary.yaml index e5f277dc3e..0985970414 100644 --- a/rdfs/10.5281/zenodo.7261974/7546703/test_summary.yaml +++ b/rdfs/10.5281/zenodo.7261974/7546703/test_summary.yaml @@ -26,31 +26,32 @@ tests: - {bioimageio_spec_version: 0.4.8post1, error: rdf does not have a compatible weight format, name: Initial compatibility checks with DeepImageJ, status: failed} ilastik: - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: load resource description + nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 + - bioimageio_core_version: 0.5.8 + bioimageio_spec_version: 0.4.9 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed @@ -69,32 +70,31 @@ tests: warnings: non-validation-warnings: ['Model tensorflow version (2, 9) does not match 1.14.0.The prediction results may be wrong'] - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: load resource description - nested_errors: null status: passed traceback: null warnings: {} - {error: null, name: has expected resource type, status: passed, traceback: null} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: All URLs and paths available nested_errors: null status: passed traceback: null warnings: {} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: null name: Test documentation completeness. status: passed traceback: null warnings: {documentation: No '# Validation' (sub)section found.} - - bioimageio_core_version: 0.5.8 - bioimageio_spec_version: 0.4.9 + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 error: '''str'' object has no attribute ''decode''' name: reproduce test outputs from test inputs status: failed diff --git a/rdfs/deepimagej/DeepSTORMZeroCostDL4Mic/latest/test_summary.yaml b/rdfs/deepimagej/DeepSTORMZeroCostDL4Mic/latest/test_summary.yaml index 1588860013..1281fb427e 100644 --- a/rdfs/deepimagej/DeepSTORMZeroCostDL4Mic/latest/test_summary.yaml +++ b/rdfs/deepimagej/DeepSTORMZeroCostDL4Mic/latest/test_summary.yaml @@ -69,21 +69,6 @@ tests: line 479, in _download_url\n raise RuntimeError(f\"Failed to download {uri} ({e})\") from e\n"] warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights - nested_errors: null - status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] - warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 error: 'Failed to download https://raw.githubusercontent.com/deepimagej/models/master/deepstorm_zerocostdl4mic/exampleImage.npy @@ -122,3 +107,18 @@ tests: line 479, in _download_url\n raise RuntimeError(f\"Failed to download {uri} ({e})\") from e\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/deepimagej/MU-Lux_CTC_PhC-C2DL-PSC/latest/test_summary.yaml b/rdfs/deepimagej/MU-Lux_CTC_PhC-C2DL-PSC/latest/test_summary.yaml index de8c7dd8b3..b28f0d1e6f 100644 --- a/rdfs/deepimagej/MU-Lux_CTC_PhC-C2DL-PSC/latest/test_summary.yaml +++ b/rdfs/deepimagej/MU-Lux_CTC_PhC-C2DL-PSC/latest/test_summary.yaml @@ -51,21 +51,6 @@ tests: postprocess=True\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/marshmallow/schema.py\", line 909, in _do_load\n raise exc\n"] warnings: {} - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights - nested_errors: null - status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] - warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 error: '{''_schema'': [''Minimal shape [ 1. 32. 32. 1.] of output output is too @@ -85,3 +70,18 @@ tests: postprocess=True\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/marshmallow/schema.py\", line 909, in _do_load\n raise exc\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using keras_hdf5 weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {} diff --git a/rdfs/deepimagej/SkinLesionClassification/latest/test_summary.yaml b/rdfs/deepimagej/SkinLesionClassification/latest/test_summary.yaml index 395b817431..4a2f1c032f 100644 --- a/rdfs/deepimagej/SkinLesionClassification/latest/test_summary.yaml +++ b/rdfs/deepimagej/SkinLesionClassification/latest/test_summary.yaml @@ -15,21 +15,6 @@ tests: - {bioimageio_core_version: 0.5.9, bioimageio_spec_version: 0.4.9, name: Reproduce test outputs with DeepImageJ GUI (manually tested)., status: passed} ilastik: - - bioimageio_core_version: 0.5.7 - bioimageio_spec_version: 0.4.8 - error: local variable 'rd' referenced before assignment - name: reproduce test outputs with ilastik 1.4.0rc8 using pytorch_script weights - nested_errors: null - status: failed - traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", - line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, - decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", - " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", - line 224, in _test_load_resource\n return rd, load_summary\n"] - warnings: {} - bioimageio_core_version: 0.5.8 bioimageio_spec_version: 0.4.9 error: '{''license'': [''Must be one of: bzip2-1.0.6, Glulxe, Parity-7.0.0, OML, @@ -116,3 +101,18 @@ tests: postprocess=True\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/marshmallow/schema.py\", line 909, in _do_load\n raise exc\n"] warnings: {} + - bioimageio_core_version: 0.5.7 + bioimageio_spec_version: 0.4.8 + error: local variable 'rd' referenced before assignment + name: reproduce test outputs with ilastik 1.4.0rc8 using pytorch_script weights + nested_errors: null + status: failed + traceback: [" File \"/home/runner/work/bioimage-io-resources/bioimage-io-resources/scripts/test_with_ilastik.py\", + line 82, in run_tests\n summaries = test_model(rdf_path, weight_format=weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 41, in test_model\n model_rdf, weight_format=weight_format, devices=devices, + decimal=decimal, expected_type=\"model\"\n", " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 250, in test_resource\n rd, load_test = _test_load_resource(rdf, weight_format)\n", + " File \"/usr/share/miniconda3/envs/ilastik-env/lib/python3.7/site-packages/bioimageio/core/resource_tests.py\", + line 224, in _test_load_resource\n return rd, load_summary\n"] + warnings: {}