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ERROR: An error was encountered while running hmmsearch. #612

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J-Weijie98 opened this issue Nov 18, 2024 · 0 comments
Open

ERROR: An error was encountered while running hmmsearch. #612

J-Weijie98 opened this issue Nov 18, 2024 · 0 comments
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error Help required for a GTDB-Tk error.

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@J-Weijie98
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[2024-11-18 09:40:19] TASK: Identifying TIGRFAM protein families.

==> Processed 0/79 genomes (0%) | | [?genome/s, ETA ?]Process Process-4:
Traceback (most recent call last):
File "/media/desk16/tly2105/miniconda3/envs/gtdbtk-2.4.0/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/media/desk16/tly2105/miniconda3/envs/gtdbtk-2.4.0/lib/python3.8/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/media/desk16/tly2105/miniconda3/envs/gtdbtk-2.4.0/lib/python3.8/site-packages/gtdbtk/external/tigrfam_search.py", line 154, in _workerThread
self._topHit(output_hit_file)
File "/media/desk16/tly2105/miniconda3/envs/gtdbtk-2.4.0/lib/python3.8/site-packages/gtdbtk/external/tigrfam_search.py", line 94, in _topHit
hmm_id = line_split[3]
IndexError: list index out of range
[2024-11-18 09:40:27] ERROR: An error was encountered while running hmmsearch.
[2024-11-18 09:40:27] ERROR: Controlled exit resulting from an unrecoverable error or warning.
[2024-11-18 09:40:27] INFO: GTDB-Tk v2.4.0
[2024-11-18 09:40:27] INFO: gtdbtk align --identify_dir /media/desk16/tly2105/Bin_all/gtdbtk_identify
--out_dir /media/desk16/tly2105/Bin_all/gtdbtk_align
[2024-11-18 09:40:27] INFO: Using GTDB-Tk reference data version r220: /media/desk16/tly2105/miniconda3/envs/gtdbtk-2.4.0/share/gtdbtk-2.4.0/db
[2024-11-18 09:40:27] ERROR: Uncontrolled exit resulting from an unexpected error.
GATBDK.zip

@J-Weijie98 J-Weijie98 added the error Help required for a GTDB-Tk error. label Nov 18, 2024
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