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---
layout: workshop # DON'T CHANGE THIS.
root: . # DON'T CHANGE THIS.
carpentry: "swc" # what kind of Carpentry (must be either "dc" or "swc")
venue: "University of Tasmania" # brief name of host site without address (e.g., "Euphoric State University")
address: "IMAS Building, Hobart Waterfront" # full street address of workshop (e.g., "Room A, 123 Forth Street, Blimingen, Euphoria")
country: "au" # lowercase two-letter ISO country code such as "fr" (see https://en.wikipedia.org/wiki/ISO_3166-1)
language: "en" # lowercase two-letter ISO language code such as "fr" (see https://en.wikipedia.org/wiki/ISO_639-1)
latlng: "-42.886048,147.335837" # decimal latitude and longitude of workshop venue (e.g., "41.7901128,-87.6007318" - use http://www.latlong.net/)
humandate: "26 August - 14 October, 2016" # human-readable dates for the workshop (e.g., "Feb 17-18, 2020")
humantime: "Every Friday: 11:00am - 1:00pm" # human-readable times for the workshop (e.g., "9:00 am - 4:30 pm")
startdate: 2016-08-26 # machine-readable start date for the workshop in YYYY-MM-DD format like 2015-01-01
enddate: 2016-10-14 # machine-readable end date for the workshop in YYYY-MM-DD format like 2015-01-02
instructor: ["Damien Irving","Tom Remenyi","Mike Sumner"] # boxed, comma-separated list of instructors' names as strings, like ["Kay McNulty", "Betty Jennings", "Betty Snyder"]
helper: ["Pearse Buchanan","Bill Cohen","Paola Petrelli","Bennet McComish","Pascal Hirsch","Michael Charleston","Michael Woodhams"] # boxed, comma-separated list of helpers' names, like ["Marlyn Wescoff", "Fran Bilas", "Ruth Lichterman"]
contact: "[email protected]" # contact email address for host, lead instructor, or whoever else is handling questions
etherpad: http://pad.software-carpentry.org/DaSH # optional: URL for the workshop Etherpad if there is one
eventbrite: "26646759174" # optional: alphanumeric key for Eventbrite registration, e.g., "1234567890AB" (if Eventbrite is being used)
---
<!-- See instructions in the comments below for how to edit specific sections of this workshop template. -->
<!--
HEADER
Edit the values in the block above to be appropriate for your workshop.
If the value is not 'true', 'false', 'null', or a number, please use
double quotation marks around the value, unless specified otherwise.
And run 'tools/check' *before* committing to make sure that changes are good.
-->
<!--
EVENTBRITE
This block includes the Eventbrite registration widget if
'eventbrite' has been set in the header. You can delete it if you
are not using Eventbrite, or leave it in, since it will not be
displayed if the 'eventbrite' field in the header is not set.
-->
{% if page.eventbrite %}
<iframe
src="https://www.eventbrite.com/tickets-external?eid={{page.eventbrite}}&ref=etckt"
frameborder="0"
width="100%"
height="248px"
scrolling="auto">
</iframe>
{% endif %}
<h2 id="general">General Information</h2>
<!--
INTRODUCTION
Edit the general explanatory paragraph below if you want to change
the pitch.
-->
<p>
<a href="http://datasciencehobart.github.io/">Data Science Hobart</a>
is pleased to announce its second ever Software Carpentry workshop.
</p>
<p>
<a href="{{site.swc_site}}">Software Carpentry</a>'s mission
is to help scientists and engineers get more research done in less
time and with less pain by teaching them basic lab skills for
scientific computing. This hands-on workshop will cover basic
concepts and tools, including program design, version control, data
management, and task automation. Participants will be encouraged to
help one another and to apply what they have learned to their own
research problems.
</p>
<p align="center">
<em>
For more information on what we teach and why,
please see our paper
"<a href="http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745">Best Practices for Scientific Computing</a>".
</em>
</p>
<!--
AUDIENCE
Explain who your audience is. (In particular, tell readers if the
workshop is only open to people from a particular institution.
-->
<p id="who">
<strong>Who:</strong>
The course is aimed at graduate students and other researchers.
<strong>You don't need to have any previous knowledge of the tools that will
be presented at the workshop.</strong>
</p>
<!--
LOCATION
This block displays the address and links to maps showing directions
if the latitude and longitude of the workshop have been set. You
can use http://itouchmap.com/latlong.html to find the lat/long of an
address.
-->
{% if page.latlng %}
<p id="where">
<strong>Where:</strong>
{{page.address}}.
Get directions with
<a href="//www.openstreetmap.org/?mlat={{page.latlng | replace:',','&mlon='}}&zoom=16">OpenStreetMap</a>
or
<a href="//maps.google.com/maps?q={{page.latlng}}">Google Maps</a>.
</p>
{% endif %}
<!--
SPECIAL REQUIREMENTS
Modify the block below if there are any special requirements.
-->
<p id="requirements">
<strong>Requirements:</strong> Participants must bring a laptop with a
Mac, Linux, or Windows operating sytem (not a tablet, Chromebook, etc.) that they have administrative privileges
on. They should have a few specific software packages installed (listed <a href="#setup">below</a>).
They are also required to abide by Software Carpentry's
<a href="{{site.swc_site}}/conduct.html">Code of Conduct</a>.
</p>
<!--
ACCESSIBILITY
Modify the block below if there are any barriers to accessibility or
special instructions.
-->
<p id="accessibility">
<strong>Accessibility:</strong> We are committed to making this workshop
accessible to everybody.
The workshop organisers have checked that:
</p>
<ul>
<li>The room is wheelchair / scooter accessible.</li>
<li>Accessible restrooms are available.</li>
</ul>
<p>
If there's anything else we can do to help making learning easier for
you please
{% if page.contact %}
<a href='mailto:{{page.contact}}'>get in touch</a>
{% else %}
<a href='mailto:{{site.contact}}'>get in touch</a>
{% endif %}
and we will attempt to help out.
</p>
<!--
CONTACT EMAIL ADDRESS
Display the contact email address set in the header. If an address
isn't set in the header, the Software Carpentry admin address is
used.
-->
<p id="contact">
<strong>Contact</strong>:
Please mail
{% if page.contact %}
<a href='mailto:{{page.contact}}'>{{page.contact}}</a>
{% else %}
<a href='mailto:{{site.contact}}'>{{site.contact}}</a>
{% endif %}
for more information.
</p>
<hr/>
<!--
SCHEDULE
Show the workshop's schedule. Edit the items and times in the table
to match your plans. You may also want to change 'Day 1' and 'Day
2' to be actual dates or days of the week.
-->
<h2 id="schedule">Schedule</h2>
<!-- DO NOT EDIT SURVEY LINKS -->
<p><em>Surveys</em></p>
<p>Please be sure to complete these surveys before and after the workshop.</p>
<p><a href='{{ site.swc_pre_survey }}{{ site.github.project_title }}'>Pre-workshop Survey</a></p>
<p><a href='{{ site.swc_post_survey }}{{ site.github.project_title }}'>Post-workshop Survey</a></p>
<p><em>Classes</em></p>
<p>Participants can elect to participate in the R or Python stream.
Both streams are fairly similar in the topics they cover,
but in the later sessions the Python stream will go into slightly more advanced topics
such as testing and defensive programming.
The (approximate) class schedule for each stream is as follows:</p>
<div class="row">
<div class="col-md-12">
<table class="table table-striped">
<tr> <td><strong>Date</strong></td> <td><strong>Rooms</strong></td> <td><strong>R Stream</strong></td> <td><strong>Python Stream</strong></td> </tr>
<tr> <td>Fri 26 Aug</td> <td>IMAS 103 & IMAS 105 (joint class)</td> <td>Unix shell: navigation, files and directories</td> <td>Unix shell: navigation, files and directories</td>
<tr> <td>Fri 02 Sep</td> <td>IMAS 107 (joint class)</td> <td>Unix shell: pipes, loops, shell scripts, finding things</td> <td>Unix shell: pipes, loops, shell scripts, finding things</td> </tr>
<tr> <td>Fri 09 Sep</td> <td>CSIRO Canteen (Python) & IMAS 107 (R)</td> <td>R: Introduction to R and RStudio; Seeking Help; Data Structures</td> <td>Python: an introductory data analysis example</td> </tr>
<tr> <td>Fri 16 Sep</td> <td>CSIRO Freycinet (Python) & IMAS 107 (R)</td> <td>R: Exploring Data Frames; Subsetting Data; Control Flow</td> <td>Python: loops, lists, conditionals and functions</td> </tr>
<tr> <td>Fri 23 Sep</td> <td>IMAS 103 (Python) & IMAS 105 (R)</td> <td>R: Creating Publication-Quality Graphics</td> <td>Python: testing and defensive programming</td> </tr>
<tr> <td>Fri 30 Sep</td> <td>IMAS 103 (Python) & IMAS 105 (R)</td> <td>R: Vectorization; Functions Explained</td> <td>Python: command line programs and debugging</td> </tr>
<tr> <td>Fri 07 Oct</td> <td>IMAS 103 (Python) & IMAS 105 (R)</td> <td>R: Writing Data; Split-Apply-Combine</td> <td>Python: tour of the scientific Python stack, question and answer session</td> </tr>
<tr> <td>Fri 14 Oct</td> <td>IMAS 107 (joint class)</td> <td>Git: Version control</td> <td>Git: Version control</tr>
</table>
</div>
</div>
<p>Lesson notes for all these sessions can be found at the Software Carpentry <a href="{{site.swc_site}}/lessons">lessons page</a>.</p>
<!--
ETHERPAD
At `_misc/etherpad.txt` you will find a template for the etherpad.
Display the Etherpad for the workshop. You can set this up in
advance or on the first day; either way, make sure you push changes
to GitHub after you have its URL. To create an Etherpad, go to
http://pad.software-carpentry.org/YYYY-MM-DD-site
where 'YYYY-MM-DD-site' is the identifier for your workshop,
e.g., '2015-06-10-esu'.
-->
{% if page.etherpad %}
<p id="etherpad">
<strong>Etherpad:</strong> <a href="{{page.etherpad}}">{{page.etherpad}}</a>.
<br/>
We will use this Etherpad for chatting, taking notes, and sharing URLs and bits of code.
</p>
{% endif %}
<hr/>
<!--
SETUP
Delete irrelevant sections from the setup instructions. Each
section is inside a 'div' without any classes to make the beginning
and end easier to find.
This is the other place where people frequently make mistakes, so
please preview your site before committing, and make sure to run
'tools/check' as well.
-->
<h2 id="setup">Setup</h2>
<p>
To participate in the Software Carpentry workshop, you will need
access to the software described below.
(Install Python or R depending on which stream you'd like to participate in -
the Bash Shell, Git and a text editor are required for both streams.)
In addition, you will need an up-to-date web browser.
</p>
<p>If you have any problems installing the software,
feel free to attend the regular Data Science Hobart meetup on the Friday before the workshop
(9:15 - 10:15am, Friday 19 August, IMAS Building).
Our instructors will be on hand to help you out.</p>
<p>
We maintain a list of common issues that occur during installation as a reference for instructors
that may be useful on the
<a href = "https://github.com/swcarpentry/workshop-template/wiki/Configuration-Problems-and-Solutions">Configuration Problems and Solutions wiki page</a>.
</p>
<div id="shell"> <!-- Start of 'shell' section. -->
<h3>The Bash Shell</h3>
<p>
Bash is a commonly-used shell that gives you the power to do simple
tasks more quickly.
</p>
<div class="row">
<div class="col-md-4">
<h4 id="shell-windows">Windows</h4>
<a href="https://www.youtube.com/watch?v=339AEqk9c-8">Video Tutorial</a>
<ol>
<li>Download the Git for Windows <a href="https://git-for-windows.github.io/">installer</a>.</li>
<li>Run the installer and follow the steps bellow:
<ol>
<!-- Git 2.6.1 Setup -->
<!-- Welcome to the Git Setup Wizard -->
<li>Click on "Next".</li>
<!-- Information -->
<li>Click on "Next".</li>
<!-- Select Destination Location -->
<li>Click on "Next".</li>
<!-- Select Components -->
<li>Click on "Next".</li>
<!-- Select Start Menu Folder -->
<li>Click on "Next".</li>
<!-- Adjusting your PATH environment -->
<li>
<strong>
Select "Use Git from the Windows Command Prompt" and click on "Next".
</strong>
If you forgot to do this programs that you need for the workshop will not work properly.
If this happens rerun the installer and select the appropriate option.
</li>
<!-- Configuring the line ending conversions -->
<li>
Click on "Next".
<strong>
Keep "Checkout Windows-style, commit Unix-style line endings" selected.
</strong>
</li>
<!-- Configuring the terminal emulator to use with Git Bash -->
<li>
<strong>
Select "Use Windows' default console window" and click on "Next".
</strong>
</li>
<!-- Configuring experimental performance tweaks -->
<li>Click on "Next".</li>
<!-- Installing -->
<!-- Completing the Git Setup Wizard -->
<li>Click on "Finish".</li>
</ol>
</li>
<li>
If your "HOME" environment variable is not set (or you don't know what this is):
<ol>
<li>Open command prompt (Open Start Menu then type <code>cmd</code> and press [Enter])</li>
<li>
Type the following line into the command prompt window exactly as shown:
<p><code>setx HOME "%USERPROFILE%"</code></p>
</li>
<li>Press [Enter], you should see <code>SUCCESS: Specified value was saved.</code></li>
<li>Quit command prompt by typing <code>exit</code> then pressing [Enter]</li>
</ol>
</li>
</ol>
<p>This will provide you with both Git and Bash in the Git Bash program.</p>
</div>
<div class="col-md-4">
<h4 id="shell-macosx">Mac OS X</h4>
<p>
The default shell in all versions of Mac OS X is Bash, so no
need to install anything. You access Bash from the Terminal
(found in
<code>/Applications/Utilities</code>).
See the Git installation <a href="https://www.youtube.com/watch?v=9LQhwETCdwY ">video tutorial</a>
for an example on how to open the Terminal.
You may want to keep
Terminal in your dock for this workshop.
</p>
</div>
<div class="col-md-4">
<h4 id="shell-linux">Linux</h4>
<p>
The default shell is usually Bash, but if your
machine is set up differently you can run it by opening a
terminal and typing <code>bash</code>. There is no need to
install anything.
</p>
</div>
</div>
</div> <!-- End of 'shell' section. -->
<div id='git'> <!-- Start of 'Git' section. GitHub browser compatability
is given at https://help.github.com/articles/supported-browsers/-->
<h3>Git</h3>
<p>
Git is a version control system that lets you track who made changes
to what when and has options for easily updating a shared or public
version of your code
on <a href="https://github.com/">github.com</a>. You will need a
<a href="https://help.github.com/articles/supported-browsers/">supported</a>
web browser (current versions of Chrome, Firefox or Safari,
or Internet Explorer version 9 or above).
</p>
<p>
You will need an account at <a href="https://github.com/">github.com</a>
for parts of the Git lesson. Basic GitHub accounts are free. We encourage
you to create a GitHub account if you don't have one already.
Please consider what personal information you'd like to reveal. For
example, you may want to review these
<a href="https://help.github.com/articles/keeping-your-email-address-private/">instructions
for keeping your email address private</a> provided at GitHub.
</p>
<div class="row">
<div class="col-md-4">
<h4 id="git-windows">Windows</h4>
<p>
Git should be installed on your computer as part of your Bash
install (described above).
</p>
</div>
<div class="col-md-4">
<h4 id="git-macosx">Mac OS X</h4>
<a href="https://www.youtube.com/watch?v=9LQhwETCdwY ">Video Tutorial</a>
<p>
<strong>For OS X 10.9 and higher</strong>, install Git for Mac
by downloading and running the most recent "mavericks" installer from
<a href="http://sourceforge.net/projects/git-osx-installer/files/">this list</a>.
After installing Git, there will not be anything in your <code>/Applications</code> folder,
as Git is a command line program.
<strong>For older versions of OS X (10.5-10.8)</strong> use the
most recent available installer labelled "snow-leopard"
<a href="http://sourceforge.net/projects/git-osx-installer/files/">available here</a>.
</p>
</div>
<div class="col-md-4">
<h4 id="git-linux">Linux</h4>
<p>
If Git is not already available on your machine you can try to
install it via your distro's package manager. For Debian/Ubuntu run
<code>sudo apt-get install git</code> and for Fedora run
<code>sudo yum install git</code>.
</p>
</div>
</div>
</div> <!-- End of 'Git' section. -->
<div id="editor"> <!-- Start of 'editor' section. -->
<h3>Text Editor</h3>
<p>
When you're writing code, it's nice to have a text editor that is
optimized for writing code, with features like automatic
color-coding of key words. The default text editor on Mac OS X and
Linux is usually set to Vim, which is not famous for being
intuitive. if you accidentally find yourself stuck in it, try
typing the escape key, followed by <code>:q!</code> (colon, lower-case 'q',
exclamation mark), then hitting Return to return to the shell.
</p>
<div class="row">
<div class="col-md-4">
<h4 id="editor-windows">Windows</h4>
<a href="https://www.youtube.com/watch?v=339AEqk9c-8">Video Tutorial</a>
<p>
nano is a basic editor and the default that instructors use in the workshop.
To install it,
download the <a href="{{site.swc_installer}}">Software Carpentry Windows installer</a>
and double click on the file to run it.
<strong>This installer requires an active internet connection.</strong>
</p>
<p>
Others editors that you can use are
<a href="http://notepad-plus-plus.org/">Notepad++</a> or
<a href="http://www.sublimetext.com/">Sublime Text</a>.
<strong>Be aware that you must
add its installation directory to your system path.</strong>
Please ask your instructor to help you do this.
</p>
</div>
<div class="col-md-4">
<h4 id="editor-macosx">Mac OS X</h4>
<p>
nano is a basic editor and the default that instructors use in the workshop.
See the Git installation <a href="https://www.youtube.com/watch?v=9LQhwETCdwY ">video tutorial</a>
for an example on how to open nano.
It should be pre-installed.
</p>
<p>
Others editors that you can use are
<a href="http://www.barebones.com/products/textwrangler/">Text Wrangler</a> or
<a href="http://www.sublimetext.com/">Sublime Text</a>.
</p>
</div>
<div class="col-md-4">
<h4 id="editor-linux">Linux</h4>
<p>
nano is a basic editor and the default that instructors use in the workshop.
It should be pre-installed.
</p>
<p>
Others editors that you can use are
<a href="https://wiki.gnome.org/Apps/Gedit">Gedit</a>,
<a href="http://kate-editor.org/">Kate</a> or
<a href="http://www.sublimetext.com/">Sublime Text</a>.
</p>
</div>
</div>
</div> <!-- End of 'editor' section. -->
<div id="python"> <!-- Start of 'Python' section. Remove the third paragraph if
the workshop will teach Python using something other than
the IPython notebook.
Details at http://ipython.org/ipython-doc/2/install/install.html#browser-compatibility -->
<h3>Python</h3>
<p>
<a href="http://python.org">Python</a> is a popular language for
scientific computing, and great for general-purpose programming as
well. Installing all of its scientific packages individually can be
a bit difficult, so we recommend
<a href="https://www.continuum.io/anaconda">Anaconda</a>,
an all-in-one installer.
</p>
<p>
Regardless of how you choose to install it,
<strong>please make sure you install Python version 3.x</strong>
(e.g., 3.4 is fine).
</p>
<p>
We will teach Python using the IPython notebook, a programming environment
that runs in a web browser. For this to work you will need a reasonably
up-to-date browser. The current versions of the Chrome, Safari and
Firefox browsers are all <a
href='http://ipython.org/ipython-doc/2/install/install.html#browser-compatibility'>supported</a>
(some older browsers, including Internet Explorer version 9
and below, are not).
</p>
<div class="row">
<div class="col-md-4">
<h4 id="python-windows">Windows</h4>
<a href="https://www.youtube.com/watch?v=xxQ0mzZ8UvA">Video Tutorial</a>
<ol>
<li>Open <a href="http://continuum.io/downloads">http://continuum.io/downloads</a> with your web browser.</li>
<li>Download the Python 3 installer for Windows.</li>
<li>Install Python 3 using all of the defaults for installation <em>except</em> make sure to check <strong>Make Anaconda the default Python</strong>.</li>
</ol>
</div>
<div class="col-md-4">
<h4 id="python-macosx">Mac OS X</h4>
<a href="https://www.youtube.com/watch?v=TcSAln46u9U">Video Tutorial</a>
<ol>
<li>Open <a href="http://continuum.io/downloads">http://continuum.io/downloads</a> with your web browser.</li>
<li>Download the Python 3 installer for OS X.</li>
<li>Install Python 3 using all of the defaults for installation.</li>
</ol>
</div>
<div class="col-md-4">
<h4 id="python-linux">Linux</h4>
<ol>
<li>Open <a href="http://continuum.io/downloads">http://continuum.io/downloads</a> with your web browser.</li>
<li>Download the Python 3 installer for Linux.</li>
<li>Install Python 3 using all of the defaults for installation.
(Installation requires using the shell. If you aren't
comfortable doing the installation yourself
stop here and request help at the workshop.)</li>
<li>
Open a terminal window.
</li>
<li>
Type <pre>bash Anaconda3-</pre> and then press
tab. The name of the file you just downloaded should
appear.
</li>
<li>
Press enter. You will follow the text-only prompts. When
there is a colon at the bottom of the screen press the down
arrow to move down through the text. Type <code>yes</code> and
press enter to approve the license. Press enter to approve the
default location for the files. Type <code>yes</code> and
press enter to prepend Anaconda to your <code>PATH</code>
(this makes the Anaconda distribution the default Python).
</li>
</ol>
</div>
</div>
<!--
<p>
Once you are done installing the software listed above,
please go to <a href="setup/index.html">this page</a>,
which has instructions on how to test that everything was installed correctly.
</p>
-->
</div> <!-- End of 'Python' section. -->
<div id="r"> <!-- Start of 'R' section. -->
<h3>R</h3>
<p>
<a href="http://www.r-project.org">R</a> is a programming language
that is especially powerful for data exploration, visualization, and
statistical analysis. To interact with R, we use
<a href="http://www.rstudio.com/">RStudio</a>.
</p>
<div class="row">
<div class="col-md-4">
<h4 id="r-windows">Windows</h4>
<a href="https://www.youtube.com/watch?v=q0PjTAylwoU">Video Tutorial</a>
<p>
Install R by downloading and running
<a href="http://cran.r-project.org/bin/windows/base/release.htm">this .exe file</a>
from <a href="http://cran.r-project.org/index.html">CRAN</a>.
Also, please install the
<a href="http://www.rstudio.com/ide/download/desktop">RStudio IDE</a>.
</p>
</div>
<div class="col-md-4">
<h4 id="r-macosx">Mac OS X</h4>
<a href="https://www.youtube.com/watch?v=5-ly3kyxwEg">Video Tutorial</a>
<p>
Install R by downloading and running
<a href="http://cran.r-project.org/bin/macosx/R-latest.pkg">this .pkg file</a>
from <a href="http://cran.r-project.org/index.html">CRAN</a>.
Also, please install the
<a href="http://www.rstudio.com/ide/download/desktop">RStudio IDE</a>.
</p>
</div>
<div class="col-md-4">
<h4 id="r-linux">Linux</h4>
<p>
You can download the binary files for your distribution
from <a href="http://cran.r-project.org/index.html">CRAN</a>. Or
you can use your package manager (e.g. for Debian/Ubuntu
run <code>sudo apt-get install r-base</code> and for Fedora run
<code>sudo yum install R</code>). Also, please install the
<a href="http://www.rstudio.com/ide/download/desktop">RStudio IDE</a>.
</p>
</div>
</div>
</div> <!-- End of 'R' section. -->