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Black edge / small area of slice for deepslice #165

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NicoKiaru opened this issue Apr 24, 2023 · 1 comment
Open

Black edge / small area of slice for deepslice #165

NicoKiaru opened this issue Apr 24, 2023 · 1 comment
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enhancement New feature or request

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@NicoKiaru
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With RGB images, the black background is not really well adapted for sending to DeepSlice, but also to export registered images:

image

A white background could be an option.

Also, when the slice spans an area too small, it's not going to give good results with DeepSlice. Running DeepSlice two times could be a solution. Having a way to automatically detect the slice area and put a warning is also an idea, but making a simple autodetection could be hard...

Thanks @PolarBean for noticing!

@NicoKiaru NicoKiaru added the enhancement New feature or request label Jul 13, 2023
@NicoKiaru
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Similar issue: #186

Note that one can restrict the region of export by defining a ROI. This works well to run DeepSlice on a rat dataset for instance.

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