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environment.yml
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environment.yml
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name: ContraNovo
channels:
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- ca-certificates=2023.05.30=h06a4308_0
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libstdcxx-ng=11.2.0=h1234567_1
- ncurses=6.4=h6a678d5_0
- openssl=3.0.10=h7f8727e_0
- pip=23.2.1=py39h06a4308_0
- python=3.9.17=h955ad1f_0
- readline=8.2=h5eee18b_0
- setuptools=68.0.0=py39h06a4308_0
- sqlite=3.41.2=h5eee18b_0
- tk=8.6.12=h1ccaba5_0
- wheel=0.38.4=py39h06a4308_0
- xz=5.4.2=h5eee18b_0
- zlib=1.2.13=h5eee18b_0
- pip:
- absl-py==1.4.0
- aiohttp==3.8.5
- aiosignal==1.3.1
- appdirs==1.4.4
- arrow==1.2.3
- async-timeout==4.0.2
- attrs==23.1.0
- boto3==1.28.33
- botocore==1.31.33
- bravado==11.0.3
- bravado-core==6.1.0
- cachetools==5.3.1
- certifi==2023.7.22
- cffi==1.15.1
- charset-normalizer==3.2.0
- click==8.1.6
- contourpy==1.1.0
- cryptography==41.0.3
- cycler==0.11.0
- deprecated==1.2.14
- einops==0.6.1
- fastobo==0.12.2
- filelock==3.13.1
- fonttools==4.42.0
- fqdn==1.5.1
- frozenlist==1.4.0
- fsspec==2023.6.0
- future==0.18.3
- gitdb==4.0.10
- gitpython==3.1.32
- google-auth==2.22.0
- google-auth-oauthlib==1.0.0
- grpcio==1.56.2
- h5py==3.9.0
- idna==3.4
- importlib-metadata==6.8.0
- importlib-resources==6.0.1
- isoduration==20.11.0
- jinja2==3.1.2
- jmespath==1.0.1
- joblib==1.3.1
- jsonpointer==2.4
- jsonref==1.1.0
- jsonschema==4.19.0
- jsonschema-specifications==2023.7.1
- kiwisolver==1.4.4
- lark==1.1.7
- lightning-utilities==0.9.0
- llvmlite==0.40.1
- lmdb==1.4.1
- lxml==4.9.3
- markdown==3.4.4
- markupsafe==2.1.3
- matplotlib==3.7.2
- monotonic==1.6
- mpmath==1.3.0
- msgpack==1.0.5
- multidict==6.0.4
- natsort==8.4.0
- neptune==1.6.1
- networkx==3.2.1
- numba==0.57.1
- numpy==1.24.4
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.18.1
- nvidia-nvjitlink-cu12==12.3.101
- nvidia-nvtx-cu12==12.1.105
- oauthlib==3.2.2
- packaging==23.1
- pandas==2.0.3
- pillow==10.0.0
- protobuf==4.23.4
- psutil==5.9.5
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pycparser==2.21
- pygithub==2.1.1
- pyjwt==2.8.0
- pynacl==1.5.0
- pyparsing==3.0.9
- pyteomics==4.6
- python-dateutil==2.8.2
- pytorch-lightning==1.9.5
- pytz==2023.3
- pyyaml==6.0.1
- referencing==0.30.2
- requests==2.31.0
- requests-oauthlib==1.3.1
- rfc3339-validator==0.1.4
- rfc3987==1.3.8
- rpds-py==0.9.2
- rsa==4.9
- s3transfer==0.6.2
- scikit-learn==1.3.0
- scipy==1.11.1
- simplejson==3.19.1
- six==1.16.0
- smmap==5.0.0
- spectrum-utils==0.4.2
- swagger-spec-validator==3.0.3
- sympy==1.12
- tensorboard==2.13.0
- tensorboard-data-server==0.7.1
- threadpoolctl==3.2.0
- tqdm==4.65.1
- triton==2.1.0
- typing-extensions==4.7.1
- tzdata==2023.3
- uri-template==1.3.0
- urllib3==1.26.16
- webcolors==1.13
- websocket-client==1.6.2
- werkzeug==2.3.6
- wrapt==1.15.0
- yarl==1.9.2
- zipp==3.16.2