From 4b9a5de2267a001247b41588f5d83a1db2a44571 Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Wed, 21 Feb 2024 16:45:09 -0800 Subject: [PATCH] lower mincov to 6 --- .github/scripts/run_pipeline.sh | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/scripts/run_pipeline.sh b/.github/scripts/run_pipeline.sh index cde0db6..260ce8e 100755 --- a/.github/scripts/run_pipeline.sh +++ b/.github/scripts/run_pipeline.sh @@ -9,6 +9,7 @@ nextflow run main.nf \ --cache ${HOME}/.conda/envs \ --fastq_input .github/data/fastq \ --ref .github/data/assemblies/NC_000962.3.fa \ + --mincov 6 \ --outdir .github/data/test_output \ -with-report .github/data/test_output/nextflow_report.html \ -with-trace .github/data/test_output/nextflow_trace.tsv