DESCRIPTION

Package: switchgrassGWAS
Title: Genome Wide Association on Panicum virgatum
Version: 0.0.1.0000
Authors@R: 
    person(given = "Alice",
           family = "MacQueen",
           role = c("aut", "cre"),
           email = "alice.macqueen@gmail.com")
Description: The R package switchgrassGWAS provides functions for genome wide association analysis on the Panicum virgatum diversity (pvdiv) panel. switchgrassGWAS provides the code for fast, less memory intensive genome-wide association (GWAS) using bigsnpr. It also provides functions to link diversity panel phenotypic data with publicly available SNP data, to prepare GWAS results plots using ggplot, and to prepare multiple univariate GWAS results for use in the R package mashr.
License: GPL (>= 2)
Depends: 
    R (>= 3.5)
Imports:
    ashr,
    bigsnpr,
    bigstatsr,
    cluster,
    cowplot,
    dplyr,
    GGally,
    ggplot2,
    hexbin,
    lubridate,
    magrittr,
    purrr,
    readr,
    rlang,
    rlist,
    stats,
    stringr,
    tibble,
    tidyr,
    tidyselect,
    utils,
    viridis
Suggests: 
    GenomicFeatures,
    knitr,
    mashr,
    rmarkdown,
    testthat (>= 2.1.0),
    VariantAnnotation
VignetteBuilder: 
    knitr
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
URL: https://alice-macqueen.github.io/switchgrassGWAS