fix for windows tests #73
Workflow file for this run
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| name: Upload Python Package | |
| on: | |
| push: | |
| tags: | |
| - "*" | |
| jobs: | |
| deploy: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| [ | |
| "ubuntu-latest", | |
| "macos-latest", | |
| "macos-latest-large", | |
| "windows-latest", | |
| ] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| defaults: # Needed for conda | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| miniforge-variant: Mambaforge | |
| channels: acellera,conda-forge,defaults | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test package | |
| run: | | |
| pip install . | |
| pip install -q codecov coverage pytest | |
| coverage run -m pytest ./jobqueues/ --ignore=jobqueues/celeryfiles/ | |
| pytest ./tests | |
| - name: Build PyPI 📦 | |
| run: | | |
| pip install build twine versioneer==0.28 | |
| python -m build | |
| - name: Publish distribution 📦 to PyPI | |
| if: (matrix.os == 'ubuntu-latest') && (matrix.python-version == '3.10') | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| password: ${{ secrets.PUBLIC_PYPI_API_TOKEN }} | |
| skip_existing: true | |
| - name: Build and publish conda package | |
| run: | | |
| conda install anaconda-client conda-build -y -q | |
| python package/jobqueues/insert_placeholder_values.py | |
| conda build --python ${{ matrix.python-version }} --output-folder ./pkg/ --no-include-recipe --no-anaconda-upload package/jobqueues -c acellera | |
| anaconda -t ${{ secrets.ANACONDA_TOKEN_BASIC }} upload -u acellera ./pkg/*/jobqueues-*.tar.bz2 |